453D

5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEX

  • Classification: DNA

  • Deposited: 1999-02-18 Released: 2000-05-15 
  • Deposition Author(s): Neidle, S.

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Symmetric bis-benzimidazoles, a new class of sequence-selective DNA-binding molecules

Neidle, S.Mann, J.Rayner, E.J.Baron, A.Opoku-Boahen, Y.Simpson, I.J.Smith, N.J.Fox, K.R.Hartley, J.A.Kelland, L.R.

(1999) J.Chem.Soc.,Chem.Commun. --: 929-930


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')A,B12N/A
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
E96
Query on E96

Download SDF File 
Download CCD File 
A
4-{[4-HYDROXY-PHENYL]-1H-BENZIMIDAZOLE-5-YL}-BENZIMIDAZOLE-2-YL-[4-HYDROXY-BENZENE]
C26 H18 N4 O2
LUIYJLIHLJLIPT-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.234 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 25.460α = 90.00
b = 39.960β = 90.00
c = 65.660γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXL-97refinement
SHELXSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 1999-02-18 
  • Released Date: 2000-05-15 
  • Deposition Author(s): Neidle, S.

Revision History 

  • Version 1.0: 2000-05-15
    Type: Initial release
  • Version 1.1: 2008-04-26
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance