3WFX

Crystal Structure of the Imidazole-Bound Form of the HGbRL's Globin Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of a Novel Site-Swapped Globin: Proximal and Distal Sites Constituted by Two Separate Subunits

Teh, A.H.Saito, J.A.Najimudin, N.Alam, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemoglobin-like flavoprotein fused to Roadblock/LC7 domain
A, B
138Methylacidiphilum infernorum (isolate V4)Mutation(s): 0 
Gene Names: hmp
Find proteins for B3DUZ1 (Methylacidiphilum infernorum (isolate V4))
Go to UniProtKB:  B3DUZ1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEZ
Query on HEZ

Download SDF File 
Download CCD File 
A, B
HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A, B
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
IMD
Query on IMD

Download SDF File 
Download CCD File 
A, B
IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.183 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 98.580α = 90.00
b = 44.330β = 119.68
c = 81.880γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
XDSdata scaling
CrystalCleardata collection
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-07-24 
  • Released Date: 2014-08-06 
  • Deposition Author(s): Teh, A.H.

Revision History 

  • Version 1.0: 2014-08-06
    Type: Initial release