3VSN

The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein

Kawaguchi, Y.Sugiura, N.Kimata, K.Kimura, M.Kakuta, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Occlusion-derived virus envelope protein E66A659Autographa californica nucleopolyhedrovirusMutation(s): 0 
Gene Names: P79
EC: 4.2.2
UniProt
Find proteins for Q00704 (Autographa californica nuclear polyhedrosis virus)
Explore Q00704 
Go to UniProtKB:  Q00704
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download Ideal Coordinates CCD File 
AB [auth A] , AC [auth A] , B [auth A] , BB [auth A] , BC [auth A] , C [auth A] , CB [auth A] , CC [auth A] , 
AB [auth A],  AC [auth A],  B [auth A],  BB [auth A],  BC [auth A],  C [auth A],  CB [auth A],  CC [auth A],  D [auth A],  DB [auth A],  DC [auth A],  E [auth A],  EB [auth A],  EC [auth A],  F [auth A],  FA [auth A],  FB [auth A],  FC [auth A],  G [auth A],  GA [auth A],  GB [auth A],  H [auth A],  HA [auth A],  HB [auth A],  I [auth A],  IA [auth A],  IB [auth A],  J [auth A],  JA [auth A],  JB [auth A],  K [auth A],  KA [auth A],  KB [auth A],  L [auth A],  LA [auth A],  LB [auth A],  M [auth A],  MA [auth A],  MB [auth A],  N [auth A],  NA [auth A],  NB [auth A],  O [auth A],  OA [auth A],  OB [auth A],  P [auth A],  PA [auth A],  PB [auth A],  Q [auth A],  QA [auth A],  QB [auth A],  R [auth A],  RA [auth A],  RB [auth A],  S [auth A],  SA [auth A],  SB [auth A],  T [auth A],  TA [auth A],  TB [auth A],  U [auth A],  UA [auth A],  UB [auth A],  V [auth A],  VA [auth A],  VB [auth A],  W [auth A],  WA [auth A],  WB [auth A],  XA [auth A],  XB [auth A],  YA [auth A],  YB [auth A],  ZA [auth A],  ZB [auth A]
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AA [auth A], BA [auth A], CA [auth A], DA [auth A], EA [auth A], X [auth A], Y [auth A], Z [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 
  • Space Group: P 62
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 118.172α = 90
b = 118.172β = 90
c = 100.099γ = 120
Software Package:
Software NamePurpose
ADSCdata collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-05-22
    Type: Initial release