3VON

Crystalstructure of the ubiquitin protease

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Molecular basis of K63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13

Sato, Y., Yamagata, A., Goto-Ito, S., Kubota, K., Miyamoto, K., Nakada, S., Fukai, S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin thioesterase OTUB1228Homo sapiensMutation(s): 0 
Gene Names: HSPC263, OTB1, OTU1, OTUB1
EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q96FW1 (Homo sapiens)
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PHAROS:  Q96FW1
Entity Groups  
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UniProt GroupQ96FW1
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-conjugating enzyme E2 variant 2
B,
D,
F,
I,
K,
138Homo sapiensMutation(s): 0 
Gene Names: MMS2, UBE2V2, UEV2
UniProt & NIH Common Fund Data Resources
Find proteins for Q15819 (Homo sapiens)
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PHAROS:  Q15819
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UniProt GroupQ15819
Protein Feature View
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-conjugating enzyme E2 N
C,
E,
G,
J,
L,
148Homo sapiensMutation(s): 0 
Gene Names: BLU, Ubc13, UBE2N
EC: 6.3.2.19 (PDB Primary Data), 2.3.2.23 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P61088 (Homo sapiens)
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PHAROS:  P61088
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UniProt GroupP61088
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.226 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102.064α = 90
b = 137.285β = 90.03
c = 257.109γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-05-30
    Type: Initial release