3VON

Crystalstructure of the ubiquitin protease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular basis of K63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13

Sato, Y.Yamagata, A.Goto-Ito, S.Kubota, K.Miyamoto, K.Nakada, S.Fukai, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin thioesterase OTUB1
A, H, O, V, c, j
228Homo sapiensMutation(s): 0 
Gene Names: OTUB1 (OTB1, OTU1)
EC: 3.4.19.12
Find proteins for Q96FW1 (Homo sapiens)
Go to Gene View: OTUB1
Go to UniProtKB:  Q96FW1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-conjugating enzyme E2 variant 2
B, D, F, I, K, M, P, R, T, W, Y, a, d, f, h, k, m, o
138Homo sapiensMutation(s): 0 
Gene Names: UBE2V2 (MMS2, UEV2)
Find proteins for Q15819 (Homo sapiens)
Go to Gene View: UBE2V2
Go to UniProtKB:  Q15819
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-conjugating enzyme E2 N
C, E, G, J, L, N, Q, S, U, X, Z, b, e, g, i, l, n, p
148Homo sapiensMutation(s): 0 
Gene Names: UBE2N (BLU)
EC: 2.3.2.23
Find proteins for P61088 (Homo sapiens)
Go to Gene View: UBE2N
Go to UniProtKB:  P61088
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.223 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 102.064α = 90.00
b = 137.285β = 90.03
c = 257.109γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
MOLREPphasing
HKL-2000data scaling
REFMACrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-01-30 
  • Released Date: 2012-05-30 
  • Deposition Author(s): Sato, Y., Fukai, S.

Revision History 

  • Version 1.0: 2012-05-30
    Type: Initial release