3VEN

Crystal structure of the O-carbamoyltransferase TobZ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.144 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The O-Carbamoyltransferase TobZ Catalyzes an Ancient Enzymatic Reaction.

Parthier, C.Gorlich, S.Jaenecke, F.Breithaupt, C.Brauer, U.Fandrich, U.Clausnitzer, D.Wehmeier, U.F.Bottcher, C.Scheel, D.Stubbs, M.T.

(2012) Angew.Chem.Int.Ed.Engl. 51: 4046-4052


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
O-carbamoyltransferase TobZ
A
576Streptoalloteichus tenebrarius (strain ATCC 17920 / DSM 40477 / NCIB 11028)Mutation(s): 1 
Gene Names: tobZ (tacA)
EC: 6.1.2.2
Find proteins for Q70IY1 (Streptoalloteichus tenebrarius (strain ATCC 17920 / DSM 40477 / NCIB 11028))
Go to UniProtKB:  Q70IY1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

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Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
TLA
Query on TLA

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Download CCD File 
A
L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
 Ligand Interaction
FE2
Query on FE2

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Download CCD File 
A
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.144 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 99.023α = 90.00
b = 99.023β = 90.00
c = 280.896γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
SOLOMONphasing
MAR345data collection
XSCALEdata scaling
XDSdata reduction
SHELXDphasing
SHELXphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-01-25
    Type: Initial release
  • Version 1.1: 2012-03-14
    Type: Database references
  • Version 1.2: 2012-05-02
    Type: Database references
  • Version 1.3: 2017-11-08
    Type: Refinement description