3V2Q

COMPcc in complex with fatty acids


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.209 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

The pentameric channel of COMPcc in complex with different fatty acids.

MacFarlane, A.A.Orriss, G.Okun, N.Meier, M.Klonisch, T.Khajehpour, M.Stetefeld, J.

(2012) PLoS One 7: e48130-e48130


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cartilage Oligomerization matrix protein (coiled-coil domain)A, B, C, D, E45Mus musculusMutation(s): 0 
Gene Names: Comp
UniProt
Find proteins for Q9R0G6 (Mus musculus)
Explore Q9R0G6 
Go to UniProtKB:  Q9R0G6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PLM (Subject of Investigation/LOI)
Query on PLM

Download Ideal Coordinates CCD File 
F [auth A], G [auth E]PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
Binding Affinity Annotations 
IDSourceBinding Affinity
PLM PDBBind:  3V2Q Kd: 510 (nM) from 1 assay(s)
Binding MOAD:  3V2Q Kd: 510 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.209 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 38.696α = 90
b = 48.573β = 103.82
c = 53.318γ = 90
Software Package:
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

  • Deposited Date: 2011-12-12 
  • Released Date: 2013-01-16 
  • Deposition Author(s): Stetefeld, J.

Revision History  (Full details and data files)

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2013-03-20
    Changes: Database references