3UU2 | pdb_00003uu2

Salmonella typhi osmoporin(OmpC):an Outer Membrane Protein

PDB DOI: https://doi.org/10.2210/pdb3UU2/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTM MemProtMD

Deposited: 2011-11-27 Released: 2012-11-28
Deposition Author(s): Prasanth, P., Putcha, B.K., Arockiasamy, A., Krishnaswamy, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.59 Å
R-Value Free:
0.358 (Depositor), 0.355 (DCC)
R-Value Work:
0.302 (Depositor), 0.302 (DCC)
R-Value Observed:
0.305 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Outer membrane protein OmpC from Salmonella typhi.

Prasanth, P., Putcha, B.K., Arockiasamy, A., Krishnaswamy, S.

To be published.

Macromolecule Content

Total Structure Weight: 117.62 kDa
Atom Count: 6,988
Modeled Residue Count: 894
Deposited Residue Count: 1,071
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein C	A, B, C	357	Salmonella enterica subsp. enterica serovar Typhimurium	Mutation(s): 0 Gene Names: ompC, STM2267 Membrane Entity: Yes
UniProt
Find proteins for P0A264 (Salmonella typhi) Explore P0A264 Go to UniProtKB: P0A264
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A264
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.59 Å
R-Value Free: 0.358 (Depositor), 0.355 (DCC)
R-Value Work: 0.302 (Depositor), 0.302 (DCC)
R-Value Observed: 0.305 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 182.201	α = 90
b = 108.568	β = 117.83
c = 113.391	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-11-28

Deposition Author(s):

Arockiasamy, A.

Krishnaswamy, S.

Revision History (Full details and data files)

Version 1.0: 2012-11-28
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.