Biological Assembly 1  

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 171.41 kDa 
• Atom Count: 12,332 
• Modelled Residue Count: 1,481 
• Deposited Residue Count: 1,550 
• Unique protein chains: 1

 3U48

From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis

• PDB DOI: 10.2210/pdb3U48/pdb

• Classification: HYDROLASE
• Organism(s): compost metagenome
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-10-07 Released: 2013-04-10 
• Deposition Author(s): McAndrew, R.P., Park, J.I., Reindl, W., Friedland, G.D., D'haeseleer, P., Northen, T., Sale, K.L., Simmons, B.A., Adams, P.D.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.219 
• R-Value Work: 0.169 
• R-Value Observed: 0.169 

Literature

From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis

McAndrew, R.P., Park, J.I., Reindl, W., Friedland, G.D., D'haeseleer, P., Northen, T., Sale, K.L., Simmons, B.A., Adams, P.D.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
JMB19063	A, B	775	compost metagenome	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BGC	C [auth A], E [auth B]	beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N
CA	D [auth A], F [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.219 
• R-Value Work: 0.169 
• R-Value Observed: 0.169 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.488	α = 90
b = 121.488	β = 90
c = 242.859	γ = 90

Software Package:

Software Name	Purpose
BOS	data collection
PHENIX	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-04-10 
Deposition Author(s): McAndrew, R.P., Park, J.I., Reindl, W., Friedland, G.D., D'haeseleer, P., Northen, T., Sale, K.L., Simmons, B.A., Adams, P.D.

Revision History  

• Version 1.0: 2013-04-10
  Type: Initial release
  
• Version 1.1: 2014-04-02
  Changes: Source and taxonomy
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary