Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CalS11
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H, I, J
257Micromonospora echinosporaMutation(s): 0 
Gene Names: calS11
Find proteins for Q8KNF1 (Micromonospora echinospora)
Explore Q8KNF1 
Go to UniProtKB:  Q8KNF1
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download Ideal Coordinates CCD File 
CA [auth E] , GA [auth F] , K [auth A] , LA [auth G] , O [auth B] , PA [auth H] , S [auth C] , WA [auth I] , 
CA [auth E],  GA [auth F],  K [auth A],  LA [auth G],  O [auth B],  PA [auth H],  S [auth C],  WA [auth I],  X [auth D],  YA [auth J]
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
GLU
Query on GLU

Download Ideal Coordinates CCD File 
DA [auth E] , HA [auth F] , L [auth A] , MA [auth G] , P [auth B] , QA [auth H] , T [auth C] , TA [auth I] , 
DA [auth E],  HA [auth F],  L [auth A],  MA [auth G],  P [auth B],  QA [auth H],  T [auth C],  TA [auth I],  Y [auth D],  ZA [auth J]
GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
AA [auth D] , BA [auth D] , BB [auth J] , CB [auth J] , FA [auth E] , JA [auth F] , KA [auth F] , N [auth A] , 
AA [auth D],  BA [auth D],  BB [auth J],  CB [auth J],  FA [auth E],  JA [auth F],  KA [auth F],  N [auth A],  OA [auth G],  R [auth B],  SA [auth H],  V [auth C],  VA [auth I],  W [auth C],  XA [auth I]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
AB [auth J] , EA [auth E] , IA [auth F] , M [auth A] , NA [auth G] , Q [auth B] , RA [auth H] , U [auth C] , 
AB [auth J],  EA [auth E],  IA [auth F],  M [auth A],  NA [auth G],  Q [auth B],  RA [auth H],  U [auth C],  UA [auth I],  Z [auth D]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A , B , C , D , E , F , G , H , 
A,  B,  C,  D,  E,  F,  G,  H,  I,  J
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.146 
  • R-Value Observed: 0.147 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.321α = 68.69
b = 106.08β = 69.63
c = 106.33γ = 88.56
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2011-10-05
    Type: Initial release
  • Version 1.1: 2012-08-08
    Changes: Structure summary
  • Version 1.2: 2017-11-08
    Changes: Refinement description