3TOS

Crystal Structure of CalS11, Calicheamicin Methyltransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of CalS11, Calicheamicin methyltransferase

Aceti, D.J.Beebe, E.T.Makino, S.-I.Wrobel, R.L.Bingman, C.A.Thorson, J.S.Phillips Jr., G.N.Chang, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CalS11
A, B, C, D, E, F, G, H, I, J
257Micromonospora echinosporaGene Names: calS11
Find proteins for Q8KNF1 (Micromonospora echinospora)
Go to UniProtKB:  Q8KNF1
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

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Download CCD File 
A, B, C, D, E, F, G, H, I, J
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, B, C, D, E, F, G, H, I, J
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
GLU
Query on GLU

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Download CCD File 
A, B, C, D, E, F, G, H, I, J
GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
 Ligand Interaction
SAH
Query on SAH

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Download CCD File 
A, B, C, D, E, F, G, H, I, J
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.146 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 78.321α = 68.69
b = 106.080β = 69.63
c = 106.330γ = 88.56
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data scaling
SCALEPACKdata scaling
PHENIXrefinement
DENZOdata reduction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2011-10-05
    Type: Initial release
  • Version 1.1: 2012-08-08
    Type: Structure summary
  • Version 1.2: 2017-11-08
    Type: Refinement description