Macromolecule Content

Total Structure Weight: 69.77 kDa
Atom Count: 4,935
Modelled Residue Count: 568
Deposited Residue Count: 592
Unique protein chains: 1

3TGV

Crystal structure of HutZ,the heme storsge protein from Vibrio cholerae

PDB DOI: 10.2210/pdb3TGV/pdb

Classification: HEME BINDING PROTEIN
Organism(s): Vibrio cholerae O395
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2011-08-17 Released: 2012-08-22
Deposition Author(s): Liu, X., Gong, J., Wang, Z., Du, Q., Wei, T., Zhu, D., Huang, Y., Xu, S., Gu, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.235
R-Value Work: 0.197
R-Value Observed: 0.199

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of HutZ,the heme storsge protein from Vibrio cholerae

Liu, X., Gong, J., Wang, Z., Du, Q., Wei, T., Zhu, D., Huang, Y., Xu, S., Gu, L.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heme-binding protein HutZ	A, B, C, D	148	Vibrio cholerae O395	Mutation(s): 1 Gene Names: hutZ, VC0395_0330
UniProt
Find proteins for A0A0H3AGE3 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A0A0H3AGE3 Go to UniProtKB: A0A0H3AGE3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3AGE3
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
BEZ Query on BEZ Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain F [auth B] SDF format, chain G [auth C] SDF format, chain H [auth D] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B] MOL2 format, chain G [auth C] MOL2 format, chain H [auth D]	E [auth B], F [auth B], G [auth C], H [auth D]	BENZOIC ACID C₇ H₆ O₂ WPYMKLBDIGXBTP-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.235
R-Value Work: 0.197
R-Value Observed: 0.199
Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.063	α = 90
b = 80.063	β = 90
c = 125.835	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-08-22

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-08-22
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.