3T34

Arabidopsis thaliana dynamin-related protein 1A (AtDRP1A) in prefission state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.405 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for mechanochemical role of Arabidopsis thaliana dynamin-related protein in membrane fission

Yan, L.M.Ma, Y.Y.Sun, Y.N.Gao, J.Chen, X.Liu, J.Wang, C.Rao, Z.Lou, Z.Y.

(2011) J Mol Cell Biol 3: 378-381


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A
A, B
360Arabidopsis thalianaMutation(s): 0 
Gene Names: DRP1A (ADL1, ADL1A, AG68, RSW9)
Find proteins for P42697 (Arabidopsis thaliana)
Go to UniProtKB:  P42697
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A, B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
ALF
Query on ALF

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Download CCD File 
A, B
TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.405 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.236 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 53.471α = 90.00
b = 86.407β = 90.55
c = 88.485γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
HKL-2000data scaling
PHENIXrefinement
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-06-06
    Type: Initial release
  • Version 1.1: 2017-06-28
    Type: Source and taxonomy