3S6L

Crystal structure of a YadA-like head domain of the trimeric autotransporter adhesin BoaA from Burkholderia pseudomallei solved by iodide ion SAD phasing


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.176 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of a YadA-like head domain of the trimeric autotransporter adhesin BoaA from Burkholderia pseudomallei

Edwards, T.E.Gardberg, A.S.Lafontaine, E.R.Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Hep_Hag familyA, B, C, D, E178Burkholderia pseudomallei 1710bMutation(s): 0 
Gene Names: BURPS1710b_A2381
UniProt
Find proteins for Q3JFX2 (Burkholderia pseudomallei (strain 1710b))
Explore Q3JFX2 
Go to UniProtKB:  Q3JFX2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3JFX2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download Ideal Coordinates CCD File 
AA [auth B],
AC [auth E],
BA [auth B],
BC [auth E],
CA [auth B],
AA [auth B],
AC [auth E],
BA [auth B],
BC [auth E],
CA [auth B],
CC [auth E],
DA [auth B],
DC [auth E],
EA [auth B],
EC [auth E],
F [auth A],
FA [auth B],
FC [auth E],
G [auth A],
GA [auth B],
GB [auth D],
GC [auth E],
H [auth A],
HA [auth B],
HB [auth D],
HC [auth E],
I [auth A],
IB [auth D],
IC [auth E],
J [auth A],
JB [auth D],
JC [auth E],
K [auth A],
KB [auth D],
KC [auth E],
L [auth A],
LB [auth D],
LC [auth E],
M [auth A],
MB [auth D],
N [auth A],
NB [auth D],
O [auth A],
OB [auth D],
P [auth A],
PA [auth C],
QA [auth C],
RA [auth C],
SA [auth C],
TA [auth C],
UA [auth C],
VA [auth C],
WA [auth C],
XA [auth C],
Y [auth B],
YA [auth C],
Z [auth B],
ZB [auth E]
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AB [auth C],
BB [auth C],
IA [auth B],
JA [auth B],
KA [auth B],
AB [auth C],
BB [auth C],
IA [auth B],
JA [auth B],
KA [auth B],
MC [auth E],
NC [auth E],
OC [auth E],
PB [auth D],
PC [auth E],
Q [auth A],
QB [auth D],
R [auth A],
RB [auth D],
S [auth A],
T [auth A],
ZA [auth C]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
CB [auth C],
DB [auth C],
EB [auth C],
FB [auth C],
LA [auth B],
CB [auth C],
DB [auth C],
EB [auth C],
FB [auth C],
LA [auth B],
MA [auth B],
NA [auth B],
OA [auth B],
QC [auth E],
RC [auth E],
SB [auth D],
SC [auth E],
TB [auth D],
TC [auth E],
U [auth A],
UB [auth D],
UC [auth E],
V [auth A],
VB [auth D],
VC [auth E],
W [auth A],
WB [auth D],
X [auth A],
XB [auth D],
YB [auth D]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144α = 90
b = 144β = 90
c = 144γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
StructureStudiodata collection
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-06-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-09-20
    Changes: Data collection