3S6L | pdb_00003s6l

Crystal structure of a YadA-like head domain of the trimeric autotransporter adhesin BoaA from Burkholderia pseudomallei solved by iodide ion SAD phasing

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Adhesin YadA, collagen-binding domain	8079920	3000252	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Adhesin YadA, collagen-binding domain	8079920	3000252	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Adhesin YadA, collagen-binding domain	8079920	3000252	SCOP2B (2022-06-29)
B	SCOP2 Family	Adhesin YadA, collagen-binding domain	8079919	4000961	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Adhesin YadA, collagen-binding domain	8079920	3000252	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Adhesin YadA, collagen-binding domain	8079920	3000252	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	YadA_head	e3s6lE1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Adhesin YadA, collagen-binding domain (From Topology)	T: Adhesin YadA, collagen-binding domain	F: YadA_head	ECOD (1.6)
D	YadA_head	e3s6lD1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Adhesin YadA, collagen-binding domain (From Topology)	T: Adhesin YadA, collagen-binding domain	F: YadA_head	ECOD (1.6)
C	YadA_head	e3s6lC1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Adhesin YadA, collagen-binding domain (From Topology)	T: Adhesin YadA, collagen-binding domain	F: YadA_head	ECOD (1.6)
B	YadA_head	e3s6lB1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Adhesin YadA, collagen-binding domain (From Topology)	T: Adhesin YadA, collagen-binding domain	F: YadA_head	ECOD (1.6)
A	YadA_head	e3s6lA1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Adhesin YadA, collagen-binding domain (From Topology)	T: Adhesin YadA, collagen-binding domain	F: YadA_head	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (4.3.0)
D	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (4.3.0)
C	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (4.3.0)
B	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (4.3.0)
A	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF05662	Coiled stalk of trimeric autotransporter adhesin (YadA_stalk)	Coiled stalk of trimeric autotransporter adhesin	-	Motif
A, B, C, D, E	PF05658	YadA head domain repeat (2 copies) (YadA_head)	YadA head domain repeat (2 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Hep_Hag family	cation binding ion binding binding metal ion binding small molecule binding	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell surface cellular anatomical structure cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR008635	Trimeric autotransporter adhesin YadA-like, stalk domain	Domain
A, B, C, D, E	IPR008640	Trimeric autotransporter adhesin YadA-like, head domain	Domain
A, B, C, D, E	IPR005594	Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain	Domain
A, B, C, D, E	IPR011049	Serralysin-like metalloprotease, C-terminal	Homologous Superfamily
A, B, C, D, E	IPR045584	Pilin-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.