3RRL

Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695

Nocek, B.Stein, A.Marshall, N.Jedrzejczak, R.Babnigg, G.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
A, C
235Helicobacter pyloriMutation(s): 0 
Gene Names: scoAHP_0691
EC: 2.8.3.5
UniProt
Find proteins for P56006 (Helicobacter pylori (strain ATCC 700392 / 26695))
Explore P56006 
Go to UniProtKB:  P56006
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56006
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
B, D
207Helicobacter pyloriMutation(s): 0 
Gene Names: scoBHP_0692
EC: 2.8.3.5
UniProt
Find proteins for P56007 (Helicobacter pylori (strain ATCC 700392 / 26695))
Explore P56007 
Go to UniProtKB:  P56007
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56007
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
E [auth C]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 156.392α = 90
b = 65.705β = 109.81
c = 104.74γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
PHENIXmodel building
MOLREPphasing
HKL-3000phasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-06-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2012-01-11
    Changes: Structure summary
  • Version 1.3: 2024-10-16
    Changes: Data collection, Database references, Derived calculations, Structure summary