3RRL

Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695

Nocek, B.Stein, A.Marshall, N.Jedrzejczak, R.Babnigg, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
A, C
235Helicobacter pylori (strain ATCC 700392 / 26695)Mutation(s): 0 
Gene Names: scoA
EC: 2.8.3.5
Find proteins for P56006 (Helicobacter pylori (strain ATCC 700392 / 26695))
Go to UniProtKB:  P56006
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
B, D
207Helicobacter pylori (strain ATCC 700392 / 26695)Mutation(s): 0 
Gene Names: scoB
EC: 2.8.3.5
Find proteins for P56007 (Helicobacter pylori (strain ATCC 700392 / 26695))
Go to UniProtKB:  P56007
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.176 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 156.392α = 90.00
b = 65.705β = 109.81
c = 104.740γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
PHENIXmodel building
SBC-Collectdata collection
HKL-3000data scaling
PHENIXrefinement
PHENIXphasing
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-01-11
    Type: Structure summary