Macromolecule Content

Total Structure Weight: 13.74 kDa
Atom Count: 880
Modelled Residue Count: 105
Deposited Residue Count: 114
Unique protein chains: 1

3RMI

Crystal structure of Chorismate mutase from Bartonella henselae str. Houston-1 in complex with malate

PDB DOI: 10.2210/pdb3RMI/pdb

Classification: ISOMERASE
Organism(s): Bartonella henselae str. Houston-1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2011-04-20 Released: 2011-05-11
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.253
R-Value Work: 0.217
R-Value Observed: 0.219

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Chorismate mutase from Bartonella henselae str. Houston-1 in complex with malate

Gardberg, A., Edwards, T., Staker, B., Stewart, L.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chorismate mutase protein	A	114	Bartonella henselae str. Houston-1	Mutation(s): 0 Gene Names: tyrA, BH16030 EC: 5.4.99.5
UniProt
Find proteins for A0A0H3LYP5 (Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1)) Explore A0A0H3LYP5 Go to UniProtKB: A0A0H3LYP5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3LYP5
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MLT Query on MLT Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	D-MALATE C₄ H₆ O₅ BJEPYKJPYRNKOW-UWTATZPHSA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.253
R-Value Work: 0.217
R-Value Observed: 0.219
Space Group: P 6₂ 2 2
Diffraction Data DOI: 10.18430/M33RMI

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.32	α = 90
b = 71.32	β = 90
c = 145.84	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-05-11

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2011-05-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.