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Crystal structure of Chorismate mutase from Bartonella henselae str. Houston-1 in complex with malate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2D8E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 Internal tracking number 218208F3. INDEX screen condition F3:
5% v/v Tacsimate pH 7.0, 0.1 M HEPES pH 7.0, 10% PEG-MME 5000. BaheA.00146.a.A1 PS00787 at 51.1 mg/ml., vapor diffusion, sitting drop, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.16 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.32 α = 90 b = 71.32 β = 90 c = 145.84 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.9765 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 19.8 98.9 0.047 27 7.8 9173 9071 -3 53.213
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.46 99.4 0.439 5.6 8.3 663
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2d8e 2.4 19.8 9173 9024 434 98.68 0.219 0.217 0.219 0.253 0.2553 RANDOM 49.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.23 1.62 3.23 -4.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.045 r_dihedral_angle_3_deg 16.736 r_dihedral_angle_4_deg 10.471 r_dihedral_angle_1_deg 4.911 r_scangle_it 3.508 r_scbond_it 2.104 r_angle_refined_deg 1.48 r_mcangle_it 1.259 r_angle_other_deg 0.902 r_mcbond_it 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.045 r_dihedral_angle_3_deg 16.736 r_dihedral_angle_4_deg 10.471 r_dihedral_angle_1_deg 4.911 r_scangle_it 3.508 r_scbond_it 2.104 r_angle_refined_deg 1.48 r_mcangle_it 1.259 r_angle_other_deg 0.902 r_mcbond_it 0.61 r_mcbond_other 0.114 r_chiral_restr 0.075 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 838 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 19
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction