Macromolecule Content

Total Structure Weight: 41.05 kDa
Atom Count: 3456
Modelled Residue Count: 363
Deposited Residue Count: 365
Unique protein chains: 1

3RHG

Crystal structure of amidohydrolase pmi1525 (target efi-500319) from proteus mirabilis hi4320

PDB DOI: 10.2210/pdb3RHG/pdb

Classification: HYDROLASE
Organism(s): Proteus mirabilis HI4320
Mutation(s): No

Deposited: 2011-04-11 Released: 2011-04-27
Deposition Author(s): Patskovsky, Y., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Raushel, F.M., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.156
R-Value Work: 0.120
R-Value Observed: 0.121

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Amidohydrolase Pmi1525 from Proteus Mirabilis Hi4320

Patskovsky, Y., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Raushel, F.M., Gerlt, J.A., Almo, S.C.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative phophotriesterase	A	365	Proteus mirabilis HI4320	Mutation(s): 0 Gene Names: PMI1525
UniProt
Find proteins for B4EXV8 (Proteus mirabilis (strain HI4320)) Explore B4EXV8 Go to UniProtKB: B4EXV8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B4EXV8
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CAC Query on CAC Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	CACODYLATE ION C₂ H₆ As O₂ OGGXGZAMXPVRFZ-UHFFFAOYSA-M		Ligand Interaction
BEZ Query on BEZ Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	BENZOIC ACID C₇ H₆ O₂ WPYMKLBDIGXBTP-UHFFFAOYSA-N		Ligand Interaction
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A]	F [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
UNL Query on UNL Download Ideal Coordinates CCD File	G [auth A], H [auth A], I [auth A]	Unknown ligand PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.156
R-Value Work: 0.120
R-Value Observed: 0.121
Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.203	α = 90
b = 101.203	β = 90
c = 65.614	γ = 120

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2011-04-11
Released Date: 2011-04-27

Deposition Author(s):

Enzyme Function Initiative (EFI)

Revision History (Full details and data files)

Version 1.0: 2011-04-27
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.