3RDV

Structure of the SLAIN2c-CLIPCG1 complex

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

SLAIN2 links microtubule plus end-tracking proteins and controls microtubule growth in interphase

van der Vaart, B., Manatschal, C., Grigoriev, I., Olieric, V., Gouveia, S.M., Bjelic, S., Demmers, J., Vorobjev, I., Hoogenraad, C.C., Steinmetz, M.O., Akhmanova, A.

(2011) J Cell Biol 193: 1083-1099

  • DOI: 10.1083/jcb.201012179
  • Primary Citation of Related Structures:  
    3RDV

  • PubMed Abstract: 

    • The ends of growing microtubules (MTs) accumulate a set of diverse factors known as MT plus end-tracking proteins (+TIPs), which control microtubule dynamics and organization. In this paper, we identify SLAIN2 as a key component of +TIP interaction n ...

    The ends of growing microtubules (MTs) accumulate a set of diverse factors known as MT plus end-tracking proteins (+TIPs), which control microtubule dynamics and organization. In this paper, we identify SLAIN2 as a key component of +TIP interaction networks. We showed that the C-terminal part of SLAIN2 bound to end-binding proteins (EBs), cytoplasmic linker proteins (CLIPs), and CLIP-associated proteins and characterized in detail the interaction of SLAIN2 with EB1 and CLIP-170. Furthermore, we found that the N-terminal part of SLAIN2 interacted with ch-TOG, the mammalian homologue of the MT polymerase XMAP215. Through its multiple interactions, SLAIN2 enhanced ch-TOG accumulation at MT plus ends and, as a consequence, strongly stimulated processive MT polymerization in interphase cells. Depletion or disruption of the SLAIN2-ch-TOG complex led to disorganization of the radial MT array. During mitosis, SLAIN2 became highly phosphorylated, and its interaction with EBs and ch-TOG was inhibited. Our study provides new insights into the molecular mechanisms underlying cell cycle-specific regulation of MT polymerization and the organization of the MT network.

    Organizational Affiliation: 

    Department of Cell Biology, Erasmus Medical Center, 3000 CA Rotterdam, Netherlands.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CAP-Gly domain-containing linker protein 1A, B, C, D72Homo sapiensMutation(s): 0 
Gene Names: CLIP-170, CLIP1, CYLN1, RSN
Find proteins for P30622 (Homo sapiens)
Explore P30622 
Go to UniProtKB:  P30622
NIH Common Fund Data Resources
PHAROS  P30622
GTEx  ENSG00000130779
Protein Feature View
Expand
  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
SLAIN motif-containing protein 2E, F, G, H8Homo sapiensMutation(s): 0 
Gene Names: SLAIN2, KIAA1458
Find proteins for Q9P270 (Homo sapiens)
Explore Q9P270 
Go to UniProtKB:  Q9P270
NIH Common Fund Data Resources
PHAROS  Q9P270
GTEx  ENSG00000109171
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BME
Query on BME
Download Ideal Coordinates CCD File 
C
BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N		 Ligand Interaction
NA
Query on NA
Download Ideal Coordinates CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.184 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 38.21α = 100.06
b = 45.74β = 105.76
c = 49.36γ = 108.39
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
RemDAqdata collection
XDSdata reduction
BALBESphasing

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-08
    Changes: Refinement description