3QWZ | pdb_00003qwz

Crystal structure of FAF1 UBX-p97N-domain complex

• PDB DOI: https://doi.org/10.2210/pdb3QWZ/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-02-28 Released: 2012-05-09 
• Deposition Author(s): Park, J.K., Jeon, H., Lee, J.J., Kim, K.H., Lee, K.J., Kim, E.E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.249 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.225 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Starting Model: experimental

Literature

Dissection of the interaction between FAF1 UBX and p97

Park, J.K., Jeon, H., Lee, J.J., Kim, K.H., Lee, K.J., Kim, E.E.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 33.6 kDa 
• Atom Count: 2,258 
• Modeled Residue Count: 258 
• Deposited Residue Count: 295 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transitional endoplasmic reticulum ATPase	A	211	Homo sapiens	Mutation(s): 0  Gene Names: VCP EC: 3.6.4.6
UniProt & NIH Common Fund Data Resources
Find proteins for P55072 (Homo sapiens) Explore P55072  Go to UniProtKB:  P55072
PHAROS:  P55072 GTEx:  ENSG00000165280

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FAS-associated factor 1	B	84	Homo sapiens	Mutation(s): 0  Gene Names: FAF1, UBXD12, UBXN3A, CGI-03
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UNN5 (Homo sapiens) Explore Q9UNN5  Go to UniProtKB:  Q9UNN5
PHAROS:  Q9UNN5 GTEx:  ENSG00000185104

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY	A	L-PEPTIDE LINKING	C8 H18 N2 O2		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.249 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.225 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.49	α = 90
b = 59.938	β = 114.83
c = 75.541	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-05-09 
Deposition Author(s): Park, J.K., Jeon, H., Lee, J.J., Kim, K.H., Lee, K.J., Kim, E.E.

Revision History  

• Version 1.0: 2012-05-09
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description