3QWZ | pdb_00003qwz

Crystal structure of FAF1 UBX-p97N-domain complex

PDB DOI: https://doi.org/10.2210/pdb3QWZ/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-02-28 Released: 2012-05-09
Deposition Author(s): Park, J.K., Jeon, H., Lee, J.J., Kim, K.H., Lee, K.J., Kim, E.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.249 (Depositor), 0.208 (DCC)
R-Value Work:
0.225 (Depositor), 0.214 (DCC)
R-Value Observed:
0.225 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Dissection of the interaction between FAF1 UBX and p97

Park, J.K., Jeon, H., Lee, J.J., Kim, K.H., Lee, K.J., Kim, E.E.

To be published.

Macromolecule Content

Total Structure Weight: 33.6 kDa
Atom Count: 2,258
Modeled Residue Count: 258
Deposited Residue Count: 295
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transitional endoplasmic reticulum ATPase	A	211	Homo sapiens	Mutation(s): 0 Gene Names: VCP EC: 3.6.4.6
UniProt & NIH Common Fund Data Resources
Find proteins for P55072 (Homo sapiens) Explore P55072 Go to UniProtKB: P55072
PHAROS: P55072 GTEx: ENSG00000165280
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P55072
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FAS-associated factor 1	B	84	Homo sapiens	Mutation(s): 0 Gene Names: FAF1, UBXD12, UBXN3A, CGI-03
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UNN5 (Homo sapiens) Explore Q9UNN5 Go to UniProtKB: Q9UNN5
PHAROS: Q9UNN5 GTEx: ENSG00000185104
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UNN5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY Query on MLY	A	L-PEPTIDE LINKING	C₈ H₁₈ N₂ O₂		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.249 (Depositor), 0.208 (DCC)
R-Value Work: 0.225 (Depositor), 0.214 (DCC)
R-Value Observed: 0.225 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.49	α = 90
b = 59.938	β = 114.83
c = 75.541	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-05-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-05-09
Type: Initial release
Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.