3OLR | pdb_00003olr

PTPN22 in complex with consensus phospho-tyrosine peptide 1

PDB DOI: https://doi.org/10.2210/pdb3OLR/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-08-26 Released: 2011-06-29
Deposition Author(s): Yu, X., Sun, J.-P., Zhang, S., Zhang, Z.-Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.210 (Depositor), 0.222 (DCC)
R-Value Work:
0.162 (Depositor), 0.180 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 3OLR

This is version 1.2 of the entry. See complete history.

Literature

Structure basis of LYP substrate specificity revealed by reverse alanine screening and crystallography

Yu, X., Sun, J.P., Chen, M., Zhang, S., Wang, L., Imasaki, T., Takagi, Y., Zhang, Z.Y.

To be published.

Macromolecule Content

Total Structure Weight: 151.96 kDa
Atom Count: 10,534
Modeled Residue Count: 1,223
Deposited Residue Count: 1,288
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein phosphatase non-receptor type 22	A, B, C, D	313	Homo sapiens	Mutation(s): 1 Gene Names: PTPN22, PTPN8 EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2R2 (Homo sapiens) Explore Q9Y2R2 Go to UniProtKB: Q9Y2R2
PHAROS: Q9Y2R2 GTEx: ENSG00000134242
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9Y2R2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
SKAP2	E, F, G, H	9	N/A	Mutation(s): 0

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PTR Query on PTR	E, F, G, H	L-PEPTIDE LINKING	C₉ H₁₂ N O₆ P		TYR

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.210 (Depositor), 0.222 (DCC)
R-Value Work: 0.162 (Depositor), 0.180 (DCC)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.897	α = 99.06
b = 62.766	β = 96.53
c = 117.461	γ = 105.06

Software Package:

Software Name	Purpose
HKL-3000	data collection
PHASES	phasing
CNS	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-06-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-06-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.