3OEE

Structure of four mutant forms of yeast F1 ATPase: alpha-F405S


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of four mutant forms of yeast F1 ATPase: alpha-F405S

Arsenieva, D.Symersky, J.Wang, Y.Pagadala, V.Mueller, D.M.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit alphaA, B, C, J, K, L, S, T, U510Saccharomyces cerevisiaeMutation(s): 1 
Gene Names: ATP1YBL099WYBL0827
EC: 3.6.3.14
Find proteins for P07251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P07251
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  • Reference Sequence

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit betaD, E, F, M, N, O, V, W, X484Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ATP2YJR121WJ2041
EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt)
Find proteins for P00830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P00830
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  • Reference Sequence

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit gammaG, P, Y278Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ATP3ATP3aATP3bYBR039WYBR0408
EC: 3.6.3.14
Find proteins for P38077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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  • Reference Sequence

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit deltaH, Q, Z138Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ATP16YDL004WYD8119.03D2935
EC: 3.6.3.14
Find proteins for Q12165 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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  • Reference Sequence

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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit epsilon1, I, R61Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ATP15YPL271WP0345
EC: 3.6.3.14
Find proteins for P21306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P21306
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP

Download CCD File 
A, B, C, D, F, J, K, L, M, O, S, T, U, V, X
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
PO4
Query on PO4

Download CCD File 
E, N
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
MG
Query on MG

Download CCD File 
A, B, C, D, F, J, K, L, M, O, S, T, U, V, X
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.213 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.43α = 90
b = 288.58β = 101.37
c = 187.17γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-09-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance