3OEE

Structure of four mutant forms of yeast F1 ATPase: alpha-F405S


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of four mutant forms of yeast F1 ATPase: alpha-F405S

Arsenieva, D.Symersky, J.Wang, Y.Pagadala, V.Mueller, D.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit alpha
A, B, C, J, K, L, S, T, U
510Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 1 
Gene Names: ATP1
Find proteins for P07251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P07251
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit beta
D, E, F, M, N, O, V, W, X
484Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP2
EC: 7.1.2.2
Find proteins for P00830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P00830
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit gamma
G, P, Y
278Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP3 (ATP3a, ATP3b)
Find proteins for P38077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38077
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit delta
H, Q, Z
138Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP16
Find proteins for Q12165 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12165
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit epsilon
I, R, 1
61Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATP15
Find proteins for P21306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P21306
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
E, N
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ANP
Query on ANP

Download SDF File 
Download CCD File 
A, B, C, D, F, J, K, L, M, O, S, T, U, V, X
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, F, J, K, L, M, O, S, T, U, V, X
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.212 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 110.430α = 90.00
b = 288.580β = 101.37
c = 187.170γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
Blu-Icedata collection
MOLREPphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-09-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance