3OA8

Diheme SoxAX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Diheme SoxAX proteins - insights into structure and function of the active site

Kilmartin, J.Maher, M.J.Krusong, K.Hanson, G.R.Bernhardt, P.V.Riley, M.Kappler, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SoxA
A, C, E
275Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113)Mutation(s): 0 
Gene Names: soxA
EC: 2.8.5.2
Find proteins for D7A6E5 (Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113))
Go to UniProtKB:  D7A6E5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
SoxX
B, D, F
208Starkeya novellaMutation(s): 0 
Gene Names: soxX
Find proteins for Q7BQR5 (Starkeya novella)
Go to UniProtKB:  Q7BQR5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
HEC
Query on HEC

Download SDF File 
Download CCD File 
A, B, C, D, E, F
HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSS
Query on CSS
A, C, E
L-PEPTIDE LINKINGC3 H7 N O2 S2CYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.183 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 73.172α = 110.02
b = 74.629β = 108.08
c = 74.295γ = 108.54
Software Package:
Software NamePurpose
REFMACrefinement
SHARPphasing
SCALEPACKdata scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2010-08-04 
  • Released Date: 2011-05-18 
  • Deposition Author(s): Maher, M.J.

Revision History 

  • Version 1.0: 2011-05-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance