Download MendeleyDiheme SoxAX proteins - insights into structure and function of the active site
Kilmartin, J., Maher, M.J., Krusong, K., Hanson, G.R., Bernhardt, P.V., Riley, M., Kappler, U.To be published.
3OA8 | pdb_00003oa8
Diheme SoxAX
- PDB DOI: https://doi.org/10.2210/pdb3OA8/pdb
- Classification: Heme-binding protein/Heme-binding protein
- Organism(s): Ancylobacter novellus
- Expression System: Rhodobacter capsulatus
- Mutation(s): No
- Deposited: 2010-08-04 Released: 2011-05-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.230 (Depositor)
- R-Value Work: 0.183 (Depositor), 0.186 (DCC)
- R-Value Observed: 0.185 (Depositor)
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SoxA | 275 | Ancylobacter novellus | Mutation(s): 0 EC: 2.8.5.2 |  | |
UniProt | |||||
Find proteins for D7A6E5 (Ancylobacter novellus (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIMB 10456)) Explore D7A6E5 Go to UniProtKB: D7A6E5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D7A6E5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SoxX | 208 | Ancylobacter novellus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q7BQR5 (Ancylobacter novellus) Explore Q7BQR5 Go to UniProtKB: Q7BQR5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7BQR5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEC Query on HEC | G [auth A] H [auth B] J [auth C] K [auth D] L [auth E] | HEME C C34 H34 Fe N4 O4 HXQIYSLZKNYNMH-LJNAALQVSA-N |  | ||
| SO4 Query on SO4 | I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSS Query on CSS | A, C, E | L-PEPTIDE LINKING | C3 H7 N O2 S2 |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.77 Å
- R-Value Free: 0.230 (Depositor)
- R-Value Work: 0.183 (Depositor), 0.186 (DCC)
- R-Value Observed: 0.185 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.172 | α = 110.02 |
| b = 74.629 | β = 108.08 |
| c = 74.295 | γ = 108.54 |
| Software Name | Purpose |
|---|---|
| SHARP | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2011-05-18 Deposition Author(s): Maher, M.J.
Revision History (Full details and data files)
- Version 1.0: 2011-05-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
