3NF1 | pdb_00003nf1

Crystal structure of the TPR domain of kinesin light chain 1

• PDB DOI: https://doi.org/10.2210/pdb3NF1/pdb

• Classification: MOTOR PROTEIN, TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-06-09 Released: 2011-05-25 
• Deposition Author(s): Tong, Y., Tempel, W., Shen, L., Shen, Y., Nedyalkova, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 
  0.273 (Depositor), 0.302 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.216 (DCC) 
• R-Value Observed: 
  0.204 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the TPR domain of kinesin light chain 1

Tong, Y., Tempel, W., Shen, L., Shen, Y., Nedyalkova, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 35.44 kDa 
• Atom Count: 2,149 
• Modeled Residue Count: 283 
• Deposited Residue Count: 311 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kinesin light chain 1	A	311	Homo sapiens	Mutation(s): 0  Gene Names: KLC1, KLC, KNS2
UniProt & NIH Common Fund Data Resources
Find proteins for Q07866 (Homo sapiens) Explore Q07866  Go to UniProtKB:  Q07866
PHAROS:  Q07866 GTEx:  ENSG00000126214

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free:  0.273 (Depositor), 0.302 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.216 (DCC) 
• R-Value Observed: 0.204 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.685	α = 90
b = 74.685	β = 90
c = 156.168	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
BUSTER	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-25 
Deposition Author(s): Tong, Y., Tempel, W., Shen, L., Shen, Y., Nedyalkova, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2011-05-25
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2023-09-06
  Changes: Data collection, Database references, Refinement description