Download MendeleyCrystal Structure of human Insulin-degrading enzyme (IDE) in complex with human B-type natriuretic peptide (BNP)
Ralat, L.A., Funke, T., Ren, M., Guo, Q., Dickey, D.M., Potter, L.R., Tang, W.-J.To be published.
3N56
Crystal Structure of human Insulin-degrading enzyme (IDE) in complex with human B-type natriuretic peptide (BNP)
- PDB DOI: 10.2210/pdb3N56/pdb
- Classification: HYDROLASE/HORMONE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2010-05-24 Released: 2010-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.10 Å
- R-Value Free: 0.243
- R-Value Work: 0.202
- R-Value Observed: 0.203
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Insulin-degrading enzyme | A, B | 990 | Homo sapiens | Mutation(s): 14 Gene Names: HCG_1810909, IDE, RP11-366I13.1-001 EC: 3.4.24.56 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14735 (Homo sapiens) Explore P14735 Go to UniProtKB: P14735 | |||||
PHAROS: P14735 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P14735 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Natriuretic peptides B | C, D | 32 | Homo sapiens | Mutation(s): 0 Gene Names: NPPB |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P16860 (Homo sapiens) Explore P16860 Go to UniProtKB: P16860 | |||||
PHAROS: P16860 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P16860 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DIO Query on DIO | F [auth A], G [auth B] | 1,4-DIETHYLENE DIOXIDE C4 H8 O2 RYHBNJHYFVUHQT-UHFFFAOYSA-N |  | Ligand Interaction | |
| ZN Query on ZN | E [auth A], H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.10 Å
- R-Value Free: 0.243
- R-Value Work: 0.202
- R-Value Observed: 0.203
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 264.036 | α = 90 |
| b = 264.036 | β = 90 |
| c = 90.645 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-11-17 Deposition Author(s): Funke, T., Guo, Q., Tang, W.-J.
Revision History (Full details and data files)
- Version 1.0: 2010-11-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description
