3MVN

Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.159 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP

Filippova, E.V.Minasov, G.Shuvalova, L.Kiryukhina, O.Clancy, S.Joachimiak, A.Anderson, F.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase
A
163Haemophilus ducreyi (strain 35000HP / ATCC 700724)Mutation(s): 0 
Gene Names: mpl
EC: 6.3.2.45
Find proteins for Q7VN73 (Haemophilus ducreyi (strain 35000HP / ATCC 700724))
Go to UniProtKB:  Q7VN73
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.159 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 46.996α = 90.00
b = 46.996β = 90.00
c = 106.628γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
HKL-3000phasing
DMmodel building
REFMACrefinement
SHELXDphasing
DMphasing
Blu-Icedata collection
ARP/wARPmodel building
MLPHAREphasing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-06-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description