The Crystal Structure of a Homoserine Dehydrogenase from Thiobacillus denitrificans to 2.15A
Stein, A.J., Cui, H., Chin, S., Savchenko, A., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Homoserine dehydrogenase | 444 | Thiobacillus denitrificans ATCC 25259 | Mutation(s): 0  Gene Names: Tbd_0843 EC: 1.1.1.3 | ![]() | |
UniProt | |||||
Find proteins for Q3SKI5 (Thiobacillus denitrificans (strain ATCC 25259 / T1)) Explore Q3SKI5  Go to UniProtKB:  Q3SKI5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3SKI5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | B [auth A], C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.613 | α = 90 |
b = 67.613 | β = 90 |
c = 224.279 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SBC-Collect | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
SHELX | phasing |
MLPHARE | phasing |
DM | phasing |
ARP/wARP | model building |
Coot | model building |