3MTJ

The Crystal Structure of a Homoserine Dehydrogenase from Thiobacillus denitrificans to 2.15A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Crystal Structure of a Homoserine Dehydrogenase from Thiobacillus denitrificans to 2.15A

Stein, A.J.Cui, H.Chin, S.Savchenko, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Homoserine dehydrogenase
A
444Thiobacillus denitrificans (strain ATCC 25259)Mutation(s): 0 
EC: 1.1.1.3
Find proteins for Q3SKI5 (Thiobacillus denitrificans (strain ATCC 25259))
Go to UniProtKB:  Q3SKI5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.217 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 67.613α = 90.00
b = 67.613β = 90.00
c = 224.279γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
DMphasing
SCALEPACKdata scaling
HKL-3000data scaling
Cootmodel building
HKL-3000data reduction
REFMACrefinement
MLPHAREphasing
SHELXphasing
SBC-Collectdata collection
DENZOdata reduction
ARP/wARPmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-05-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description