3MT1

Crystal structure of putative carboxynorspermidine decarboxylase protein from Sinorhizobium meliloti


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of putative carboxynorspermidine decarboxylase protein from Sinorhizobium meliloti

Chang, C.Xu, X.Cui, H.Chin, S.Savchenko, A.Edwards, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative carboxynorspermidine decarboxylase protein
A, B
365Rhizobium meliloti (strain 1021)Mutation(s): 0 
Gene Names: nspC
EC: 4.1.1.96
Find proteins for Q92TG9 (Rhizobium meliloti (strain 1021))
Go to UniProtKB:  Q92TG9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.190 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 69.769α = 90.00
b = 75.773β = 90.00
c = 129.801γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
MLPHAREphasing
HKL-3000data reduction
SHELXEmodel building
HKL-3000phasing
RESOLVEphasing
DMmodel building
REFMACrefinement
SBC-Collectdata collection
RESOLVEmodel building
HKL-3000data scaling
ARP/wARPmodel building
SHELXDphasing
DMphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-06-30
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description