3MDY

Crystal structure of the cytoplasmic domain of the bone morphogenetic protein receptor type-1B (BMPR1B) in complex with FKBP12 and LDN-193189


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the cytoplasmic domain of the bone morphogenetic protein receptor type-1B (BMPR1B) in complex with FKBP12 and LDN-193189

Chaikuad, A.Sanvitale, C.Mahajan, P.Daga, N.Cooper, C.Krojer, T.Alfano, I.Knapp, S.von Delft, F.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Bullock, A.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bone morphogenetic protein receptor type-1B
A, C
337Homo sapiensMutation(s): 0 
Gene Names: BMPR1B
EC: 2.7.11.30
Find proteins for O00238 (Homo sapiens)
Go to UniProtKB:  O00238
NIH Common Fund Data Resources
PHAROS  O00238

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Peptidyl-prolyl cis-trans isomerase FKBP1A
B, D
109Homo sapiensMutation(s): 0 
Gene Names: FKBP12FKBP1AFKBP1
EC: 5.2.1.8
Find proteins for P62942 (Homo sapiens)
Go to UniProtKB:  P62942
NIH Common Fund Data Resources
PHAROS  P62942
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LDN
Query on LDN

Download CCD File 
A, C
4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline
C25 H22 N6
CDOVNWNANFFLFJ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
LDNIC50:  0.9399999976158142   nM  BindingDB
LDNIC50:  2.200000047683716   nM  BindingDB
LDNIC50:  60   nM  BindingDB
LDNIC50:  14.300000190734863   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.41α = 90
b = 80.01β = 90
c = 183.33γ = 90
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2010-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance