3MDY

Crystal structure of the cytoplasmic domain of the bone morphogenetic protein receptor type-1B (BMPR1B) in complex with FKBP12 and LDN-193189


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the cytoplasmic domain of the bone morphogenetic protein receptor type-1B (BMPR1B) in complex with FKBP12 and LDN-193189

Chaikuad, A.Sanvitale, C.Mahajan, P.Daga, N.Cooper, C.Krojer, T.Alfano, I.Knapp, S.von Delft, F.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Bullock, A.Structural Genomics Consortium (SGC)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Bone morphogenetic protein receptor type-1BA, B [auth C]337Homo sapiensMutation(s): 0 
Gene Names: BMPR1B
EC: 2.7.11.30
Find proteins for O00238 (Homo sapiens)
Explore O00238 
Go to UniProtKB:  O00238
NIH Common Fund Data Resources
PHAROS:  O00238
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase FKBP1AC [auth B], D109Homo sapiensMutation(s): 0 
Gene Names: FKBP12FKBP1AFKBP1
EC: 5.2.1.8
Find proteins for P62942 (Homo sapiens)
Explore P62942 
Go to UniProtKB:  P62942
NIH Common Fund Data Resources
PHAROS:  P62942
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LDN
Query on LDN

Download Ideal Coordinates CCD File 
E [auth A], F [auth C]4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline
C25 H22 N6
CDOVNWNANFFLFJ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
LDNIC50:  0.9399999976158142   nM  BindingDB
LDNIC50:  2.200000047683716   nM  BindingDB
LDNIC50:  60   nM  BindingDB
LDNIC50:  19   nM  BindingDB
LDNIC50:  14.300000190734863   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.41α = 90
b = 80.01β = 90
c = 183.33γ = 90
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2010-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance