3MAW

Structure of the Newcastle disease virus F protein in the post-fusion conformation

• PDB DOI: https://doi.org/10.2210/pdb3MAW/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
• Mutation(s): No 


• Deposited: 2010-03-24 Released: 2010-05-26 
• Deposition Author(s): Jardetzky, T.S., Wen, X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.50 Å
• R-Value Free: 0.294 
• R-Value Work: 0.261 
• R-Value Observed: 0.263 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 104.47 kDa 
• Atom Count: 6,184 
• Modelled Residue Count: 836 
• Deposited Residue Count: 966 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F0	A, B	483	Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)	Mutation(s): 0  Gene Names: F
UniProt
Find proteins for P12572 (Newcastle disease virus (strain Chicken/Australia-Victoria/32)) Explore P12572  Go to UniProtKB:  P12572

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C, D, E, F	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NDG	G [auth A], H [auth B]	2-acetamido-2-deoxy-alpha-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-PVFLNQBWSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.50 Å
• R-Value Free: 0.294 
• R-Value Work: 0.261 
• R-Value Observed: 0.263 
• Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.253	α = 90
b = 83.253	β = 90
c = 461.406	γ = 120

Software Package:

Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-05-26 
Deposition Author(s): Jardetzky, T.S., Wen, X.

Revision History  

• Version 1.0: 2010-05-26
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary