3M04 | pdb_00003m04

Carbonic Anhydrase II in complex with novel sulfonamide inhibitor

• PDB DOI: https://doi.org/10.2210/pdb3M04/pdb

• Classification: LYASE/LYASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-03-02 Released: 2011-05-25 
• Deposition Author(s): Schulze Wischeler, J., Heine, A., Klebe, G., Sandner, N.U.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 
  0.170 (Depositor), 0.145 (DCC) 
• R-Value Work: 
  0.138 (DCC) 
• R-Value Observed: 
  0.128 (Depositor) 

Literature

Structural investigation and inhibitor studies on Carbonic Anhydrase II

Schulze Wischeler, J., Sandner, N.U., Haake, M., Supuran, C., Heine, A., Klebe, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 30.51 kDa 
• Atom Count: 2,283 
• Modeled Residue Count: 255 
• Deposited Residue Count: 265 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbonic anhydrase 2	A	265	Homo sapiens	Mutation(s): 0  Gene Names: CA2 EC: 4.2.1.1 (PDB Primary Data), 4.2.1.69 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P00918 (Homo sapiens) Explore P00918  Go to UniProtKB:  P00918
PHAROS:  P00918 GTEx:  ENSG00000104267

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BE7	D [auth A]	(4-CARBOXYPHENYL)(CHLORO)MERCURY C7 H5 Cl Hg O2 YFZOUMNUDGGHIW-UHFFFAOYSA-M
BE9	C [auth A]	phenyl N-sulfamoylmorpholine-4-carboximidoate C11 H15 N3 O4 S ODXJJHKPSWXDMI-QBFSEMIESA-N
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free:  0.170 (Depositor), 0.145 (DCC) 
• R-Value Work:  0.138 (DCC) 
• R-Value Observed: 0.128 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.2	α = 90
b = 41.9	β = 104.2
c = 72.3	γ = 90

Software Package:

Software Name	Purpose
MAR345	data collection
PHASER	phasing
SHELXL-97	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-25 
Deposition Author(s): Schulze Wischeler, J., Heine, A., Klebe, G., Sandner, N.U.

Revision History  

• Version 1.0: 2011-05-25
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-02-28
  Changes: Structure summary