Crystal structure of CDK2 with SAR60, an aminoindazole type inhibitor

Experimental Data Snapshot

  • Resolution: 2.03 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.187 

wwPDB Validation   3D Report Full Report

This is version 1.1 of the entry. See complete history


Rational design of potent GSK3beta inhibitors with selectivity for Cdk1 and Cdk2.

Lesuisse, D.Dutruc-Rosset, G.Tiraboschi, G.Dreyer, M.K.Maignan, S.Chevalier, A.Halley, F.Bertrand, P.Burgevin, M.C.Quarteronet, D.Rooney, T.

(2010) Bioorg Med Chem Lett 20: 1985-1989

  • DOI: 10.1016/j.bmcl.2010.01.114
  • Primary Citation of Related Structures:  
    3LAU, 3LFN, 3LFQ, 3LFS

  • PubMed Abstract: 
  • From an HTS hit, a series of potent and selective inhibitors of GSK3beta have been designed based on a Cdk2-homology model and with the help of several crystal structures of the compounds within Cdk2.

    Organizational Affiliation

    Medicinal Chemistry, 13 Quai Jules Guesde, 94300 Vitry-sur-Seine, France. dominique.lesuisse@sanofi-aventis.com

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cell division protein kinase 2A298Homo sapiensMutation(s): 0 
Gene Names: CDK2CDKN2
UniProt & NIH Common Fund Data Resources
Find proteins for P24941 (Homo sapiens)
Explore P24941 
Go to UniProtKB:  P24941
PHAROS:  P24941
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
Query on A28

Download Ideal Coordinates CCD File 
B [auth A]N-(6,7-difluoro-5-phenyl-1H-indazol-3-yl)butanamide
C17 H15 F2 N3 O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Resolution: 2.03 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.187 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.22α = 90
b = 72.74β = 90
c = 72.01γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance