Macromolecule Content

Total Structure Weight: 43.08 kDa
Atom Count: 3124
Residue Count: 350
Unique protein chains: 1

3L6A

Crystal structure of the C-terminal region of Human p97

DOI: 10.2210/pdb3L6A/pdb

Classification: TRANSLATION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-12-23 Released: 2010-04-28
Deposition Author(s): Fan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.250
R-Value Work: 0.200
R-Value Observed: 0.203

wwPDB Validation3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the C-terminal region of human p97/DAP5.

Fan, S., Jia, M.Z., Gong, W.

(2010) Proteins 78: 2385-2390

PubMed: 20544972 Search on PubMed
DOI: 10.1002/prot.22735
Primary Citation of Related Structures:
3L6A

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Eukaryotic translation initiation factor 4 gamma 2	A	364	Homo sapiens	Mutation(s): 0 Gene Names: EIF4G2, DAP5, OK/SW-cl.75
Find proteins for P78344 (Homo sapiens) Explore P78344 Go to UniProtKB: P78344
NIH Common Fund Data Resources
PHAROS P78344 GTEx ENSG00000110321
Protein Feature View Expand
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MES Query on MES Download CCD File	A	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Ligand Interaction
PG4 Query on PG4 Download CCD File	A	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Ligand Interaction
PEG Query on PEG Download CCD File	A	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Ligand Interaction
SO4 Query on SO4 Download CCD File	A	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.250
R-Value Work: 0.200
R-Value Observed: 0.203
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.084	α = 90
b = 102.27	β = 90
c = 112.973	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2009-12-23
Released Date: 2010-04-28

Deposition Author(s):

Revision History

Version 1.0: 2010-04-28
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2019-12-18
Changes: Database references

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.