3L6A | pdb_00003l6a

Crystal structure of the C-terminal region of Human p97

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.250 (Depositor), 0.200 (DCC) 
  • R-Value Work: 
    0.200 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 
    0.203 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 3L6A

This is version 1.4 of the entry. See complete history. 

Literature

Crystal structure of the C-terminal region of human p97/DAP5.

Fan, S., Jia, M.Z., Gong, W.

(2010) Proteins 78: 2385-2390

Macromolecule Content 

  • Total Structure Weight: 43.08 kDa 
  • Atom Count: 3,124 
  • Modeled Residue Count: 350 
  • Deposited Residue Count: 364 
  • Unique protein chains: 1

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 4 gamma 2364Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P78344 (Homo sapiens)
Explore P78344 
Go to UniProtKB:  P78344
PHAROS:  P78344
GTEx:  ENSG00000110321 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP78344
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MES

Query on MES


Download:Ideal Coordinates CCD File
B [auth A],
C [auth A]		2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
PG4

Query on PG4


Download:Ideal Coordinates CCD File
D [auth A],
E [auth A]		TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
PEG

Query on PEG


Download:Ideal Coordinates CCD File
F [auth A]DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4

Query on SO4


Download:Ideal Coordinates CCD File
G [auth A],
H [auth A]		SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.250 (Depositor), 0.200 (DCC) 
  • R-Value Work:  0.200 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 0.203 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 31.084α = 90
b = 102.27β = 90
c = 112.973γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

  • Released Date: 2010-04-28 
    • Deposition Author(s): Fan, S.

Revision History  (Full details and data files)

  • Version 1.0: 2010-04-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description
  • Version 1.3: 2019-12-18
    Changes: Database references
  • Version 1.4: 2024-03-20
    Changes: Data collection, Database references, Derived calculations