3KSM

Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.164 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.1 of the entry. See complete history


Literature

Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis

Bagaria, A.Kumaran, D.Burley, S.K.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ABC-type sugar transport system, periplasmic componentA, B276Hahella chejuensis KCTC 2396Mutation(s): 0 
Gene Names: HCH_06819
UniProt
Find proteins for Q2S7D2 (Hahella chejuensis (strain KCTC 2396))
Explore Q2S7D2 
Go to UniProtKB:  Q2S7D2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BDR (Subject of Investigation/LOI)
Query on BDR

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]beta-D-ribofuranose
C5 H10 O5
HMFHBZSHGGEWLO-TXICZTDVSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.164 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.439α = 103.49
b = 47.712β = 90.49
c = 79.723γ = 91.06
Software Package:
Software NamePurpose
CBASSdata collection
SHARPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-12-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2021-02-10
    Changes: Database references, Structure summary