Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum

Experimental Data Snapshot

  • Resolution: 2.25 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report

This is version 1.2 of the entry. See complete history


Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum

Edwards, T.E.Abendroth, J.Stahl, G.Sankaran, B.Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
tRNA (guanine-N(1)-)-methyltransferaseA, B, C, D253Anaplasma phagocytophilum str. HZMutation(s): 0 
Gene Names: trmDAPH_1267
EC: (PDB Primary Data), (UniProt)
Find proteins for Q2GIL5 (Anaplasma phagocytophilum (strain HZ))
Explore Q2GIL5 
Go to UniProtKB:  Q2GIL5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2GIL5
Protein Feature View
  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.291α = 90
b = 104.304β = 90
c = 99.105γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-11-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description