3KNU

Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum

Edwards, T.E.Abendroth, J.Stahl, G.Sankaran, B.Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
tRNA (guanine-N(1)-)-methyltransferase
A, B, C, D
253Anaplasma phagocytophilum (strain HZ)Mutation(s): 0 
Gene Names: trmD
EC: 2.1.1.228
Find proteins for Q2GIL5 (Anaplasma phagocytophilum (strain HZ))
Go to UniProtKB:  Q2GIL5
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 104.291α = 90.00
b = 104.304β = 90.00
c = 99.105γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-2000data scaling
HKL-2000data reduction
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-11-24
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description