Download MendeleyStructure of human LCK kinase with a small molecule inhibitor
Graves, B.J., Surgenor, A., Harris, W., Smith, I., Orchard, S., Flotow, H., Murray, E.To be published.
3KMM
Structure of human LCK kinase with a small molecule inhibitor
- PDB DOI: https://doi.org/10.2210/pdb3KMM/pdb
- Classification: TRANSFERASE/TRANSFERASE INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Deposited: 2009-11-10 Released: 2010-12-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.223
- R-Value Work: 0.165
- R-Value Observed: 0.167
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Proto-oncogene tyrosine-protein kinase LCK | A | 288 | Homo sapiens | Mutation(s): 1 Gene Names: LCK EC: 2.7.10.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06239 (Homo sapiens) Explore P06239 Go to UniProtKB: P06239 | |||||
PHAROS: P06239 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06239 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LHL Query on LHL | B [auth A] | 3-(2,6-dichlorophenyl)-7-({4-[2-(diethylamino)ethoxy]phenyl}amino)-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one C25 H28 Cl2 N6 O2 LQYPBKQMDVWUGO-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PTR Query on PTR | A | L-PEPTIDE LINKING | C9 H12 N O6 P |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.223
- R-Value Work: 0.165
- R-Value Observed: 0.167
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.579 | α = 90 |
| b = 74.16 | β = 90 |
| c = 92.85 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| CNX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2010-12-08 Deposition Author(s): Graves, B.J., Surgenor, A., Harris, W., Smith, I., Orchard, S., Flotow, H., Murray, E.
Revision History (Full details and data files)
- Version 1.0: 2010-12-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-03-07
Changes: Data collection - Version 1.3: 2021-10-13
Changes: Database references, Derived calculations
