Download MendeleyCrystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.65 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3KGW
Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.65 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3KGW/pdb
- Classification: TRANSFERASE
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-10-29 Released: 2009-12-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.198
- R-Value Work: 0.169
- R-Value Observed: 0.171
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alanine-glyoxylate aminotransferase | A, B | 393 | Mus musculus | Mutation(s): 0 Gene Names: AAH25799.1, Agxt, mCG_16569, Agxt1 EC: 2.6.1.44 (UniProt), 2.6.1.51 (UniProt) |  |
UniProt | |||||
Find proteins for O35423 (Mus musculus) Explore O35423 Go to UniProtKB: O35423 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O35423 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A], I [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | E [auth A], F [auth A], G [auth A], H [auth A], K [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | D [auth A], J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.198
- R-Value Work: 0.169
- R-Value Observed: 0.171
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33KGW
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.36 | α = 90 |
| b = 112.729 | β = 90 |
| c = 117.193 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2009-12-15 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-12-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2019-07-17
Changes: Data collection, Refinement description - Version 1.4: 2023-02-01
Changes: Database references, Derived calculations
