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Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.65 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H0C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.8 293 20.0000% polyethylene glycol 3350, 0.2000M potassium acetate, No Buffer pH 7.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 47.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.36 α = 90 b = 112.729 β = 90 c = 117.193 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 29.683 100 0.079 0.079 16.6 7.1 98429 21.992
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 100 0.967 0.967 0.8 7.2 7170
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 1h0c 1.65 29.683 98341 4909 99.97 0.171 0.169 0.195 0.198 0.2234 RANDOM 18.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.31 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.144 r_dihedral_angle_4_deg 14.278 r_dihedral_angle_3_deg 10.892 r_dihedral_angle_1_deg 4.355 r_scangle_it 3.88 r_scbond_it 2.41 r_angle_refined_deg 1.783 r_mcangle_it 1.589 r_angle_other_deg 1.396 r_mcbond_it 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.144 r_dihedral_angle_4_deg 14.278 r_dihedral_angle_3_deg 10.892 r_dihedral_angle_1_deg 4.355 r_scangle_it 3.88 r_scbond_it 2.41 r_angle_refined_deg 1.783 r_mcangle_it 1.589 r_angle_other_deg 1.396 r_mcbond_it 0.92 r_mcbond_other 0.272 r_chiral_restr 0.108 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5979 Nucleic Acid Atoms Solvent Atoms 561 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement PHENIX refinement MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing