3IXC | pdb_00003ixc

Crystal structure of hexapeptide transferase family protein from Anaplasma phagocytophilum

PDB DOI: https://doi.org/10.2210/pdb3IXC/pdb

Classification: TRANSFERASE
Organism(s): Anaplasma phagocytophilum str. HZ
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-09-03 Released: 2009-09-22
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free:
0.194 (Depositor), 0.233 (DCC)
R-Value Work:
0.176 (Depositor)
R-Value Observed:
0.176 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of hexapeptide transferase family protein from Anaplasma phagocytophilum

Edwards, T.E., Davies, D.R., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecule Content

Total Structure Weight: 20.57 kDa
Atom Count: 1,526
Modeled Residue Count: 166
Deposited Residue Count: 191
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hexapeptide transferase family protein	A	191	Anaplasma phagocytophilum str. HZ	Mutation(s): 0 Gene Names: APH_1197
UniProt
Find proteins for Q2GIS1 (Anaplasma phagocytophilum (strain HZ)) Explore Q2GIS1 Go to UniProtKB: Q2GIS1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q2GIS1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free: 0.194 (Depositor), 0.233 (DCC)
R-Value Work: 0.176 (Depositor)
R-Value Observed: 0.176 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.091	α = 90
b = 92.091	β = 90
c = 92.091	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-09-22

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2009-09-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.