3IVP

The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630.

Tan, K.Marshall, N.Jedrzejczak, R.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative transposon-related DNA-binding protein
A, B, C, D
126Peptoclostridium difficile (strain 630)Mutation(s): 0 
Find proteins for Q180H4 (Peptoclostridium difficile (strain 630))
Go to UniProtKB:  Q180H4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PG4
Query on PG4

Download SDF File 
Download CCD File 
C, D
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.200 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 49.326α = 90.00
b = 69.829β = 90.00
c = 170.359γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
DMmodel building
SBC-Collectdata collection
SHELXDphasing
MLPHAREphasing
HKL-3000phasing
ARPmodel building
REFMACrefinement
HKL-3000data scaling
DMphasing
WARPmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-09-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Source and taxonomy, Version format compliance