3IG4

Structure of a putative aminopeptidase P from Bacillus anthracis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of a putative aminopeptidase P from Bacillus anthracis

Anderson, S.M.Wawrzak, Z.Skarina, T.Onopriyenko, O.Kwon, K.Anderson, W.F.Savchenko, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Xaa-pro aminopeptidase
A, B, C, D, E, F
A, B, C, D, E, F
427Bacillus anthracisMutation(s): 0 
Gene Names: BAS1763BA_1901GBAA1901GBAA_1901F0720_10055FYB77_24390GRA88_11395GRA94_23490GRA98_10795
UniProt
Find proteins for A0A6L8PS06 (Bacillus anthracis)
Explore A0A6L8PS06 
Go to UniProtKB:  A0A6L8PS06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6L8PS06
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth C],
AB [auth F],
BA [auth C],
BB [auth F],
CA [auth C],
AA [auth C],
AB [auth F],
BA [auth C],
BB [auth F],
CA [auth C],
CB [auth F],
DA [auth C],
DB [auth F],
EA [auth C],
FA [auth C],
I [auth A],
IA [auth D],
J [auth A],
JA [auth D],
K [auth A],
KA [auth D],
L [auth A],
LA [auth D],
M [auth A],
MA [auth D],
N [auth A],
NA [auth D],
O [auth A],
OA [auth D],
P [auth A],
RA [auth E],
S [auth B],
SA [auth E],
T [auth B],
TA [auth E],
U [auth B],
UA [auth E],
V [auth B],
VA [auth E],
W [auth B],
X [auth B],
YA [auth F],
ZA [auth F]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
MN
Query on MN

Download Ideal Coordinates CCD File 
G [auth A],
GA [auth D],
H [auth A],
HA [auth D],
PA [auth E],
G [auth A],
GA [auth D],
H [auth A],
HA [auth D],
PA [auth E],
Q [auth B],
QA [auth E],
R [auth B],
WA [auth F],
XA [auth F],
Y [auth C],
Z [auth C]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F
A, B, C, D, E, F
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 180.88α = 90
b = 180.88β = 90
c = 254.78γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
BLU-MAXdata collection
HKL-2000data reduction
SHARPphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-08-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2011-12-14
    Changes: Database references, Structure summary
  • Version 1.3: 2017-11-01
    Changes: Refinement description