3IEI

Crystal structure of human leucine carboxylmethyltransferase-1 in complex with S-adenosyl homocysteine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Insights into Novel Functions of a pro-survival PP2A-specific Methyltransferase

Stanevich, V.Jiang, L.Satyshur, K.A.Li, Y.Jeffrey, P.D.Li, Z.Semmelhack, M.F.Xing, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Leucine carboxyl methyltransferase 1
A, B, C, D, E, F, G, H
334Homo sapiensMutation(s): 4 
Gene Names: LCMT1 (LCMT)
EC: 2.1.1.233
Find proteins for Q9UIC8 (Homo sapiens)
Go to Gene View: LCMT1
Go to UniProtKB:  Q9UIC8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
SAH
Query on SAH

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
MES
Query on MES

Download SDF File 
Download CCD File 
B, D, E, H
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.184 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 106.036α = 105.41
b = 81.127β = 93.97
c = 82.816γ = 104.29
Software Package:
Software NamePurpose
CBASSdata collection
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2009-07-22 
  • Released Date: 2010-08-11 
  • Deposition Author(s): Xing, Y., Jeffry, P.D.

Revision History 

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance